MEGU: Pathway Mapping Web-Service Based on KEGG and SVG

نویسندگان

  • Nobuaki Kono
  • Kazuharu Arakawa
  • Masaru Tomita
چکیده

Scientific visualization is a key technology to enhance our understanding of huge masses of omics data, especially for cell-wide, high-throughput measurements of the physiological networks. We have developed a web application that visualizes complex omics data of multiple layers simultaneously, including transcriptome, proteome, and metabolome, onto an integrated pathway diagram derived by connecting the individual KEGG pathway maps; the mapped images are generated in Scalable Vector Graphics for easy editing by hand or with computer programs or drawing software. The web application is available at http://megu.iab.keio.ac.jp/.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways

While generation of high-throughput expression data is becoming routine, the fast, easy, and systematic presentation and analysis of these data in a biological context is still an obstacle. To address this need, we have developed PathwayExplorer, which maps expression profiles of genes or proteins simultaneously onto major, currently available regulatory, metabolic and cellular pathways from KE...

متن کامل

ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics

SUMMARY ArrayXPath (http://www.snubi.org/software/ArrayXPath/) is a web-based service for mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics (SVG). Deciphering the crosstalk among pathways and integrating biomedical ontologies and knowledge bases may help biological interpretation of microarray data. ArrayXPath is ...

متن کامل

Adaptive Visualisation of Geographic Information on Mobile Devices

iii Abstract The progresses in the fields of mobile Internet and positioning methods have lead to a plethora of new possibilities for cartography in mobile usage environments. However, principles of web mapping cannot simply be transferred to the mobile environment. Likewise the availability of Location Based Services (LBS) has made it possible to develop mobile map services, yet LBS themselves...

متن کامل

RIMapperWMS: a Web Map Service providing SVG maps with a built-in client

This paper introduces RIMapperWMS, a light-weight web mapping application that conforms to the Open Geospatial Consortium’s Web Map Service specification. It serves interactive web maps from a spatial database back-end. Compared to existing WMS implementations, it stands out firstly because it serves its maps in the Scalable Vector Graphics format. This allows it to offer high-quality vector ca...

متن کامل

Dynamic web-mapping using Scalable Vector Graphics (SVG)

Web-mapping is a growing and popular use of GIS but creating even a simple map is often a non-trivial and costly task. One potential solution to this problem is Scalable Vector Graphics (SVG), an XML based 2D graphics standard. SVG offers rich client-side interactivity and unrivalled graphical quality, without the need for an expensive mapping/applications server. We introduce SVG technology an...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • In silico biology

دوره 6 6  شماره 

صفحات  -

تاریخ انتشار 2006